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- ItemMetadata only16S rRNA metagenomic data of microbial diversity of Pheidole decarinata Santschi (Hymenoptera: Formicidae) workers(Elsevier, 2020-07-17) Mohammed Ahmed Ashigar; Abdul Hafiz Ab MajidMetagenomic datasets of the microbial DNA of workers of a Pheidole decarinata Santschi (Hymenoptera: Formicidae) around houses with three replicates were presented. Next-generation sequencing of the microbial DNA was performed on an Illumina Miseq platform. QIIME (version 1.9.1) was used to analyze the raw fastq files. Metagenome of the three (3) samples consist of 333,708 sequences representing 137,359,149 bps with an average length of 413.67 bps. The sequence data is available at the NCBI SRA with the bioproject number PRJNA632430. Community analysis revealed Proteobacteria was the predominant (84.77%) microbial community present in the microbial DNA of workers of the P. decarinata.
- ItemMetadata onlyA transcriptomic (RNA-seq) analysis of Drosophila melanogaster adult testes overexpressing microRNA-2b-1(Elsevier, 2022-11-13) Sharvin Manickam; Shallinie Thangadurai; Azali Azlan; Zarina Amin; Ghows Azzam; Mardani Abdul HalimMicroRNAs (miRNAs) are short non-coding single-stranded RNAs with approximately 22 nucleotides in length that negatively regulate the mRNA translation of a target gene. MiR-2b-1 belongs to the largest miR-2 family in Drosophila melanogaster with 8 members and this miRNA family is conserved in invertebrates. miRNAs play key roles in gene regulation, cell proliferation, cell death, cell differentiation and cell developmental homeostasis in multicellular organisms. Its role in various human diseases is continuously being studied. miRNAs also found out to be crucial in maintaining stem cell niche in D. melanogaster gonads. We have identified that ectopic overexpression of miR-2b-1 of D. melanogaster causes testicular bulging (a tumour like phenotype) in 3-5 days old adult flies. Hence, we have performed a transcriptomic (RNA-seq) analysis to understand the role of miR-2b-1 in the development, maintenance, and differentiation of D. melanogaster adult testis stem cells. Data are available from GEO (accession number GSE211399).
- ItemMetadata onlyA UK-based ground truth data set of GCMS analysed ignitable liquid samples — a template for making chromatographic data accessible as an open source data set(Elsevier, 2022-10-12) Miller, Jonathan; Puch-Solis, Roberto; Mat Desa, Wan Nur Syuhaila; Nic Daeid, NiamhFire debris is often recovered as part of a fire scene investigation to determine whether an ignitable liquid might be present which may be evidence of a deliberate fire. The analysis of fire debris produces chromatograms that a forensic chemist uses to determine whether or not an ignitable liquid may be present. Currently there are very few publicly available data sets that can be used for training and statistical modelling in this area. The data set in this paper has been prepared with these two applications in mind and covers a wide range of ignitable liquids available in the UK. We created a data set of 35 ignitable liquids including petrol (gasoline), light, medium and heavy petroleum distillates (i.e diesel) from several retailers. Each ignitable liquid was systematically evaporated to produce six additional samples. Each sample was repetitively analysed to provide an overall data set of 751 analytical outputs (including chromatograms). Each data sample is expressed in multiple formats and the metadata containing any data used in the production of the samples is included. The folder and file names are designed to avoid misplacements and to manipulate folders and files systematically using computer code.
- ItemOpen AccessAdaptation & Validation of Malay Version of the COVID-19 Vaccine Hesitancy Questionnaire (C19-VHS-M) among Healthcare Workers (HCWs) in MalaysiaSiti Nur Aisyah Zaid; Azidah Abdul Kadir; Norhayati Mohd Noor; Basaruddin Ahmad; Muhamad Saiful Bahri Yusoff; Anis Safura Ramli; Jasy Liew Suet Yan
- ItemOpen AccessAgronomy MDPI 2022 - Supplementary Materials; Proximate chemical analyses for soil, post-harvest soils, and fertilizers(6/22/2022) Dr. Ahmad Bukhary Ahmad Khair; Dr. Hadura Abu Hasan
- ItemOpen Access
- ItemOpen AccessAn empirical evaluation of ATR-FTIR-PLS for the determination of total aflatoxins in food grains and poultry feed and populations' exposure risks assessment in Malaysia and Nigeria(Mendeley, 2021-06-07) Baha'uddeen Salisu; Siti Marwanis Anua; Wan Rosli Wan Ishak; Nurzafirah Mazlan
- ItemOpen AccessAssessment of Mandibular Foramen Dimensions for Accurate Foramen Positioning and Prediction of Sex in Arab Iraqi Population Utilising Cone Beam Computed TomographyOmar Basheer Taha; Matheel AL-Rawas; Mohamad Arif Awang Naw; Johari Yap Abdullah; Asilah Yusof
- ItemOpen AccessBattery discharge characteristics for IEEE 802.15.4 based radio load profile(5/30/2021) Ali, Omer; Ishak, Mohamad Khairi; Ai Ooi, Chia; Bhatti, Muhammad Kamran Liaquat
- ItemOpen AccessBody Measurements Datasets(Mendeley, 2021-07-15) Muhammad Kiru
- ItemOpen AccessBSFF Fertilizer - Amaranthus tricolor - Shoot Systems (mm) and Post-harvest Biomass Weights (g) - ASD_INRAE 2022(Zenodo, 2022-07-11) Ahmad Bukhary Ahmad Khair; Muhammad Ijaz Allah Ditta; Ansaruddin Othman; Tun Mohd Firdaus Azis
- ItemMetadata onlyComplete chloroplast genome data for Cryptocoryne elliptica (Araceae) from Peninsular Malaysia(Elsevier, 2022-03-23) Nurul Shakina Mohd Talkah; Suwidji Wongso; Ahmad Sofiman OthmanThe aquatic plant genus Cryptocoryne, a popular plant genus in the aquarium industry, is made up of more than 50 described species and some 15 naturally occurring named and unnamed interspecific hybrids. Cryptocoryne elliptica has a restricted distribution in the north part of Peninsular Malaysia. Destruction of its natural habitats for various human activities has led to a decline in numbers. Here, we report the complete chloroplast genome of C. elliptica and establish a molecular dataset for a maternally inherited genome. Here, we utilized an Illumina NovaSeq 6000 protocol to sequence the partial genome of C. elliptica and used bioinformatic tools to reconstruct the chloroplast genome in de novo mode. The assembled chloroplast genome is a circular DNA molecule 159,968 bp in length. The chloroplast genome has a quadripartite structure composed of a large single-copy region of 96,273 bp and a small single-copy (SSC) region of 15,205 bp, separated by a pair of inverted repeats (IRa and IRb), each of which is 24,245 bp. The chloroplast genome of C. elliptica encodes a total of 108 genes, comprising 74 protein-coding genes, 30 tRNA genes and 4 rRNA genes. In total, 204 SSR loci were identified, most of which were located within intergenic regions.
- ItemOpen AccessConfidence ellipse graphs for decision making(Mendeley, 2023-05-11) Mitchelle Law Jyy Jinn; Jeevinthiran Karunagaran
- ItemOpen AccessContact-based temperature, breathing and cough patterns dataset for early COVID-19 symptoms identification(12/12/2021) Omer Ali; Mohamad Khairi Bhatti; Muhammad Kamran Liaquat
- ItemMetadata onlyCuration of an international drug proprietary names dataset(Elsevier, 2021-11-22) Mohammad A. Khaleel; Amer Hayat Khan; S.M. Sheikh Ghadzi; Sami AlshakhshirA drug dataset containing international proprietary names is essential for researchers investigating different drugs from different countries worldwide. However, many websites on the internet offer free access for a single drug searching service to identify international drug trade names, but not for a list of drugs to be searched and identified. Therefore, it will be problematic if the researcher has a list of hundreds or thousands of drug trade names to be identified. In this project, we have created an International Drug Dictionary (IDD) by curating collected drug lists from open access websites belonging to official drug regulatory agencies, official healthcare systems, or recognized scientific bodies from 44 countries around the world in addition to the European public assessment reports (EPAR) and the DRUGBANK vocabulary published in the public domain. Researchers interested in pharmacovigilance, pharmacoepidemiology, or pharmacoeconomics can benefit from this dataset, especially when identifying lists of proprietary drug names, particularly of multi-national origin. To enhance its adaptability, we also mapped the IDD to the standardized drug vocabulary RxNorm. The IDD can also be used as a tool for mapping international drug trade names to RxNorm. Each drug entity in the IDD mapped to a unique identification number for each entity called Atom Unique Identifier (RXAUI) from RxNorm.
- ItemOpen AccessCYBY23 CORPUS FOR CYBERBULLYING WITH BYSTANDER INFORMATIONLEBAI LUTFI, SYAHEERAH; ALFURAYJ, HAIFA
- ItemMetadata onlyData analysis of molecular dynamics simulation trajectories of β-sitosterol, sonidegib and cholesterol in smoothened protein with the CHARMM36 force field(Elsevier, 2020-09-29) Mohammad Tasyriq Che OmarInactivation of smoothened protein (SMO) by the antagonists in SHH-driven cancer types is essential for inhibition of cancer progression. This article presents molecular dynamics (MD) trajectories of water solution of three protein-ligand complexes smoothened-β-sitosterol (SMO-BST), smoothened-sonidegib (SMO-SNG) and smoothened-cholesterol (SMO-CLR) using CHARMM36 and SPC/E water model combination. Additionally, the work presents the topologies and trajectories of GROMACS files that were employed to analyse the protein-ligand interaction types (PyContact) and binding energy calculation (g_mmpbsa). The data demonstrated that equilibrated models of SMO-SNG and SMO-CLR complexes showed crucial residues that almost similar for interaction and contribution energy as previously reported in laboratory setup (in vitro). Initial simulations confirmed the role of ARG451 and TRP535 in the dynamic regulation of SMO. These data then were used as a reference for understanding the molecular dynamics of SMO-BST complex and thus predicted its mechanism of action.
- ItemOpen AccessData from: Optimisation of biogenic synthesis of silver nanoparticles from flavonoid-rich Clinacanthus nutans leaf and stem aqueous extracts(6/29/2020) Lim, Vuanghao; Mat Yusuf, Siti Nur Aishah; Che Mood, Che Nurul Azieyan; Ahmad, Nor Hazwani; Sandai, Doblin; Lee, Chee Keong
- ItemOpen AccessData from: Resource availability and roosting ecology shape reproductive phenology of rain forest insectivorous bats(Zenodo, 2016-11-23) Nurul-Ain, Elias; Hashim, Rosli; Kingston, Tigga; Rosli, Hashim