Escherichia coli strain INF32/16/A: Dataset of raw reads and assembled draft genome

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dc.contributorUniversiti Sains Malaysia
dc.contributorFGV R&D Sdn. Bhd.
dc.contributorUniversiti Sains Malaysia
dc.contributor.authorShuhaila Mat-Sharani
dc.contributor.authorSuhaila Sulaiman
dc.contributor.authorNik Yusnoraini Yusof
dc.date.accessioned2023-05-11T07:05:04Z
dc.date.available2023-05-11T07:05:04Z
dc.date.issued2021-06-11
dc.descriptionWhole genome sequencing performed by Illumina MiSeq system. Raw reads were trimmed using BBDuk (BBTools v36) and assembled using SPAdes v3.9.0. The scaffolding was conducted using Medusa v1.6. The genome completeness of the assembled genome was assessed using BUSCO tool. Link to data: https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR15334628
dc.description.abstractEscherichia coli strain INF32/16/A is a gram-negative bacteria which is an extended-spectrum beta-lactamases (ESBL). ESBL is an enzyme that is produced by bacteria to become resistant to existing antibiotic such as extended-spectrum penicillin, cephalosporins, and have been threatening the ability to treat an infection. Therefore, genome analysis will provide an insight of how this bacteria able to evolve and the information obtained will able to facilitate in designing new antibiotics. The genome of E. coli strain was sequenced using Illumina MiSeq and raw genome sequence have been submitted into NCBI SRA database (SRR15334628) under Bioproject accession number PRJNA726861.
dc.identifier.doi10.1016/j.dib.2021.107640
dc.identifier.urihttps://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR15334628
dc.identifier.urihttps://opendata.usm.my/handle/123456789/74651
dc.publisherElsevier
dc.rightsCC0 1.0 Universal*
dc.rights.urihttp://creativecommons.org/publicdomain/zero/1.0/*
dc.titleEscherichia coli strain INF32/16/A: Dataset of raw reads and assembled draft genome
dc.typeDataset
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Medical and Health Sciences